VISDB Viral Integration Site DataBase

VIS ID

TVIS44012420

Fusion event

HTLV-1-CMBL integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

p15.2

Reference genome

Start

End

10284947/10284835 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5096 ; hsa-mir-6083 ; hsa-mir-298 ; hsa-mir-6510-5p ; hsa-mir-1-5p ; hsa-mir-28-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-1273f ; hsa-mir-29a-5p ; hsa-mir-6890-5p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-3653-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-629-5p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-6873-3p ; hsa-mir-1306-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-642a-5p ; hsa-mir-7106-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-4469 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-103b ; hsa-mir-7705 ; hsa-mir-7641 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4695-3p ; hsa-mir-2052 ; hsa-mir-1266-3p

Nearest miRNA

hsa-mir-4277/Upstream/1230940; hsa-mir-10397/Downstream/117529;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/33947, chr5-CpG: 42/Downstream/22573

Upstream sequence

atgatgggtttatcaagacttagccccattgtaagtagaggagcatctgCATTATTTTTAAAGGCTATATTTCCTATGTGTCTTTTTTGTTTTCGTTTAT

Downstream sequence

CTATTGGTCTGAATGCTTCTATATCATGAATTTAGCAAGCAGTTTCTATATACAGATATAATGTTATTTCATTGCTGTAGTAACTTTGGTTTGTTTTGGC