VISDB Viral Integration Site DataBase

VIS ID

TVIS44012473

Fusion event

HTLV-1-OSBPL10 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p23

Reference genome

Start

End

31891954/31850462 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-222-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-3135b ; hsa-mir-103b ; hsa-mir-5693 ; hsa-mir-4781-3p ; hsa-mir-143-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-383-3p ; hsa-mir-3149 ; hsa-mir-668-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3121-5p ; hsa-mir-483-3p ; hsa-mir-129-5p ; hsa-mir-3152-5p ; hsa-mir-3667-3p ; hsa-mir-4774-3p ; hsa-mir-6734-3p ; hsa-mir-6778-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6836-3p

Nearest miRNA

hsa-mir-12127/Upstream/688675; hsa-let-7g/Downstream/655821;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/316672, chr3-CpG: 104/Downstream/130015

Upstream sequence

GAGCTAGTAAGTGAAAAATACAAACAAAAAACAAAAACAATAAACCAGGAAAGAAAATATAAAATATGACCCCACTTCCCCCTTTGTTGAAAACAATATT

Downstream sequence

CACATTTACATGCCCAGAATGGTTACTTTGGAGAATAGAGTGGAGGGGCAAAGAGCAAAGGGGCAGCAAAAAGCTTCCAACGTGTAAAAAAGGAAACCAA