Basic Information
VIS ID
TVIS44012474
Fusion event
HTLV-1-LOC101928636 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
45244079/45202587 (Hg38)
End
45244079/45202587 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928636
Nearest miRNA
hsa-mir-12127/Upstream/340606; hsa-let-7g/Downstream/2646968;
Nearest TSS
ENST00000440867/Upstream/56165; ENST00000430399/Downstream/23691;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/56133, chr3-CpG: 212/Downstream/22398
Nearby gene
TMEM158(-21877) ;
Upstream sequence
aaagaacccctccatgccaataggcaatgtcaacagctcagtacggaaatgggcaaatgacctgaactggcagttcacaacagagaatgcagtcacgcac
Downstream sequence
cacttaatgacaggggtatgatctgagaaatgggttggatgattctgtcattgtataaatatcatacagtgtacttatacaaacctagatggtatagctt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate