Basic Information
VIS ID
TVIS44012497
Fusion event
HTLV-1-LINC01081 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
86309439/86275833 (Hg38)
End
86309439/86275833 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01081
Nearest miRNA
hsa-mir-12128/Upstream/357417; hsa-mir-11401/Downstream/1558759;
Nearest TSS
ENST00000527434/Upstream/53104; ENST00000599486/Downstream/10594;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/301752, chr16-CpG: 71/Downstream/10736
Upstream sequence
TAGGGGCTCAGGTACAGAGATGATATAcaaatcccagctctgccaccttgaatacatgacttcctcactctgggcctccgtgtcgccacctataaaatgg
Downstream sequence
agatgataatattagcatccaatacatagggctagagaagtcttatatatggagacagaagtaaagtgcgtagcatttaatagggaaccaatcaatgtaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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