Basic Information
VIS ID
TVIS44012540
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
GRCh37/hg19
Start
51373827/54745451 (Hg38)
End
51373827/54745451 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/6648593; hsa-let-7a-2/Downstream/1998422;
Nearest TSS
ENST00000527297/Upstream/38619; ENST00000417545/Downstream/516731;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4446850, chr11-CpG: 94/Downstream/1127141
Nearby gene
OR4A5(-37551) ;
Upstream sequence
aggagtatggtgaaaaagtgaatatacccagataaaaactggaaaggagatatctgtgaaactgcattgtgatgtgtcaattcatgctacagtggtaatc
Downstream sequence
ctttcttctgattcagcaggttggaaactatttttgtaggatctttgaggaaatgtttgggatctcagaactgaaggaaatagagacacaaaaaaccttc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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