Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44012652
Basic Information
VIS ID
TVIS44012652
Fusion event
HTLV-1-LOC101929095 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
15345178/15343554 (Hg38)
End
15345178/15343554 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
LOC101929095
Nearest miRNA
hsa-mir-12113/Upstream/1715597; hsa-mir-12115/Downstream/5184721;
Nearest TSS
ENST00000502981/Upstream/3547;
ENST00000382383/Downstream/30995;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/338417
,
chr4-CpG: 145/Downstream/311187
Upstream sequence
CTATGTTCAACTTTTAGGAGGAAAAGTGTCAGCAAAGCAAATTCTTTTCAGTATTTTCACACTTGGAAAGTCAGCCTTTGCCTAAGTTTGAGGACCTACT
Downstream sequence
GTGGTAAAGGACAATGCAATAGGGACAGTCCAGAAGAAAATATCATCCTAACTTCAATGAGCTACCAATTGAATGGGGAAATAAAATGTGCATTCCAATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL79
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate