Basic Information
VIS ID
TVIS44012655
Fusion event
HTLV-1-MSRA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
9940033/10082523 (Hg38)
End
9940033/10082523 (Hg38)
Orient
+
Location type
Intronic
Target gene
MSRA
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-124-1/Upstream/179051; hsa-mir-10400/Downstream/584455;
Nearest TSS
ENST00000518652/Upstream/23553; ENST00000522907/Downstream/13028;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/27400, chr8-CpG: 56/Downstream/251907
Upstream sequence
GTCCACCTTCCTTCCCAGCCCTCCTTCCTTTCGCCCTCCTAAGAAAACATACGTCATCTTTTCTCCCACAAAACAGATGGAGCACTTCTTTTTGGCGTGG
Downstream sequence
GTTCTGGCTAACatccgtgcactaagggtctcatctgttacttccaaatcctaccaagttgttttctcaagcaaagaTGGGACTTTTTGAACACTGACCT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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