Basic Information
VIS ID
TVIS44012658
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
105745881/106502651 (Hg38)
End
105745881/106502651 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/11439425; hsa-mir-105-1/Downstream/137163;
Nearest TSS
ENST00000429181/Upstream/300915; ENST00000461251/Downstream/109279;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/679534, chrX-CpG: 33/Downstream/109147
Upstream sequence
aaagaattaagctaaaagctgagtcatgcaagaagccgcctttccttttgttcctaagcagatagctacaaataaaaagttaaatatctccacaggtagc
Downstream sequence
tactctgtgttcaccttattttatgtaaaatgccaatttactgagcatgagaccagaacataattgactccttccttacttgctccttttctcttgcagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate