Basic Information
VIS ID
TVIS44012660
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
19287966/18961472 (Hg38)
End
19287966/18961472 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/64324; hsa-mir-101-1/Downstream/1672207;
Nearest TSS
ENST00000473358/Upstream/4786; ENST00000437898/Downstream/116355;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4083, chr1-CpG: 83/Downstream/248185
Nearby gene
IFFO2(-5140) ;
Upstream sequence
ccgaagcgagtggatcacttgagaccaggagtttgagaccagcctggccaaaggcttaacaccgtctctagtaaaaatgcaaaaaaattagctgggcatg
Downstream sequence
gtggcatgtgcctgtagtcccagctactcaggaggctgaggcacaagaatcacttgaacccccagaggccaagattgcaccactacactccaggccagcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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