Basic Information
VIS ID
TVIS44012673
Fusion event
HTLV-1-DPH6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
35826441/35534240 (Hg38)
End
35826441/35534240 (Hg38)
Orient
-
Location type
Intronic
Target gene
DPH6
Nearest miRNA
hsa-mir-1233-1/Upstream/161876; hsa-mir-10393/Downstream/392616;
Nearest TSS
ENST00000557528/Upstream/79480; ENST00000560866/Downstream/8251;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/412001, chr15-CpG: 56/Downstream/11685
Upstream sequence
gccgaggtggacagagcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctcaactaaaaatacaaaattagccgggcatg
Downstream sequence
gtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaaccctggaggcagaggttgtggtgagccaagattgtgccattg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate