Basic Information
VIS ID
TVIS44012705
Fusion event
HTLV-1-VEPH1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.32
Reference genome
GRCh37/hg19
Start
157078326/157360537 (Hg38)
End
157078326/157360537 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
VEPH1
Nearest miRNA
hsa-let-7g/Upstream/5794542; hsa-mir-1224/Downstream/1922109;
Nearest TSS
ENST00000440867/Upstream/197085; ENST00000295927/Downstream/3944;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/185290, chr3-CpG: 59/Downstream/76941
Upstream sequence
TTCTTTTTTTTTAAGTACAGATGATGAATTTATTCAACATTTTTGGGAAAAAAAAGCAAAGTTAACTAGTTAATTGTCAAACTAcggatgctttttgact
Downstream sequence
tatgatggggttatgtccccataaccccattgtaagttgaaaatcttacatcaaaaatgcatttaatacacttaacctaccgaacatcatagcctagcct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate