Basic Information
VIS ID
TVIS44012708
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
107531094/106988472 (Hg38)
End
107531094/106988472 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/6707164; hsa-mir-11399/Downstream/908751;
Nearest TSS
ENST00000473358/Upstream/170233; ENST00000370078/Downstream/68207;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/907240, chr1-CpG: 104/Downstream/68111
Nearby gene
PRMT6(+68173) ;
Upstream sequence
tgtacaggaagtcctagctagtatattggcaagaaaaaaatatataggctacatagatagggagaaaagagacaaaactgtctgtttgcagatgacatca
Downstream sequence
aagtctatatacaaaaccccaaagaatcaacaaaaacatctgttgcaggatacaaggttaatatataaaagtaaatagctttctcttacaggcaatgaac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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