Basic Information
VIS ID
TVIS44012770
Fusion event
HTLV-1-LOC107984384 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
109893633/110022907 (Hg38)
End
109893633/110022907 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984384
Nearest miRNA
hsa-mir-10392/Upstream/6172927; hsa-let-7a-2/Downstream/1324850;
Nearest TSS
ENST00000527297/Upstream/199060; ENST00000528673/Downstream/70454;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/598650, chr11-CpG: 162/Downstream/69607
Nearby gene
ZC3H12C(+70454) ;
Upstream sequence
TGTCACATTGCTTTGCCACTCTGCTGACGAAGTCTTCATCTTCACTCAGGTACTGATATTAATCTTATGCTAGAATACCTGCTTTCCTTTTGTCATTTTC
Downstream sequence
AACACAGTAAGAGGATGAAATCTGACTTAATTGTATAATACTGACATTTTGGCAGATGCAAATGCTTCCTACTCCCCCAGTTTTACCTGGAAGAGAATAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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