Basic Information
VIS ID
TVIS44012772
Fusion event
HTLV-1-LOC107984451 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
131261321/130776776 (Hg38)
End
131261321/130776776 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC107984451
Nearest miRNA
hsa-let-7i/Upstream/2482598; hsa-mir-6763/Downstream/1805221;
Nearest TSS
ENST00000382841/Upstream/60495; ENST00000546264/Downstream/24684;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/60595, chr12-CpG: 56/Downstream/41772
Nearby gene
STX2(-12824) ;
Upstream sequence
CCGTTATTTCATTTAACGCTCGCTGAATCAAGCTGCACTGAGGTCCTATTGTTCAAACAGGAAGTAGCAGTGCAGGGGACGATGCGGCCGCAGGGCTAGA
Downstream sequence
AAAGGCTGGAGCTGGGGTCAGAACAGGCTTTGCCTCCATGAGAGCGCTGTCCAGCTGCTGGTTTCTGGCCCCAGCCGGCTCTCCTGTTACTGTTCTGCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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