Basic Information
VIS ID
TVIS44012825
Fusion event
HTLV-1-RAC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
37637454/37241414 (Hg38)
End
37637454/37241414 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
RAC2
miRNAs that regulate target gene
hsa-mir-193b-3p
Nearest miRNA
hsa-mir-1286/Upstream/954507; hsa-let-7a-3/Downstream/602858;
Nearest TSS
ENST00000624155/Upstream/9911; ENST00000467664/Downstream/2834;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/33700, chr22-CpG: 19/Downstream/18151
Upstream sequence
TCCTCCACGTCCCTTTGCTTGGAGGCCCAGCCTAAAGGCCACCCCTCCTCCCTTCTACCCCTTCCTCCATACCCCATCCCGGGTTCTGGGAGCCCCCAGC
Downstream sequence
ACCTCTCAGCGCCAGTGCTGCCTTCTTGGCTGGACTGTCAGGCAGCTCCACTGGGCTGGAGGCTGTGGGTGCCCACACAGGGTCTGGCCCACAGGAAGTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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