Basic Information
VIS ID
TVIS44012846
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
47982607/47755468 (Hg38)
End
47982607/47755468 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/377698; hsa-mir-10b/Downstream/1304135;
Nearest TSS
ENST00000437798/Upstream/59649; ENST00000493177/Downstream/27614;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/64193, chr2-CpG: 166/Downstream/27201
Nearby gene
MSH6(+27614) ;
Upstream sequence
tacagacatgcgccaccattcctggccAGGCTAATGTTTTAAATGTAAAATAAGAGTATTGATAGTCCAGACGTTGTGTTGCATTTTATTCTTCTGTGCC
Downstream sequence
CATGGTCATTTCAGAAGGAACTTACGGTTCCTTGAAGCAGAAAGTAAATTTGCATTTCATAGTGAGTTGGAGATGAGAGCAAGCTGGGAACCCACAGCAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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