Basic Information
VIS ID
TVIS44012850
Fusion event
HTLV-1-LOC100506207 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
8675944/8675711 (Hg38)
End
8675944/8675711 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100506207
Nearest miRNA
hsa-mir-3691/Upstream/2506276; hsa-mir-10398/Downstream/1764006;
Nearest TSS
ENST00000381078/Upstream/240100; ENST00000645232/Downstream/486066;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/239803, chr6-CpG: 41/Downstream/723149
Upstream sequence
TTCACCATTTCTTGTTCTTAGAGGTCTTCAATGGACTTTATTAATGAAAAGCTTACCTAATACGAACTTTCTCATTTTCTTTTTTTAATCTGCATAATTA
Downstream sequence
GTATTGAGAATTTTTTGTTGTGCATCATATCATTTTATCAGTTGTAATTACATCTGATTCTTTTGTTGCTTAAATAATAAAACAATATTTTTCTTTTACT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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