Basic Information
VIS ID
TVIS44012867
Fusion event
HTLV-1-LOC107985675 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
7931498/7963457 (Hg38)
End
7931498/7963457 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985675
Nearest miRNA
hsa-mir-3690-1/Upstream/815520; hsa-let-7f-2/Downstream/163508;
Nearest TSS
ENST00000429181/Upstream/35718; ENST00000422160/Downstream/43921;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/35890, chrX-CpG: 144/Downstream/767359
Nearby gene
PNPLA4(-35718) ;
Upstream sequence
AAATGGTAGAAAAACGGGTACAATGATGGAGATAATTTGTCTCATGCATTTTCCACAAGAGAAATTTTTTGTAAGTTAATTTTTAAATGCTTTGTgaaag
Downstream sequence
ggcataaaattttgaattagaagtcttgtgtttgtattctgggtctaccatttaactctcattcacagaaagttcattttcatgtaggaccttcagctaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate