Basic Information
VIS ID
TVIS44012916
Fusion event
HTLV-1-LOC107984618 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
112091616/111439269 (Hg38)
End
112091616/111439269 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984618
Nearest miRNA
hsa-mir-1267/Upstream/1098240; hsa-mir-4502/Downstream/1823651;
Nearest TSS
ENST00000623511/Upstream/118601; ENST00000607406/Downstream/148932;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/27594, chr13-CpG: 16/Downstream/80616
Nearby gene
TEX29(No orient, 95022)
Upstream sequence
TGCAGACTCAGGAGGTCTGGGATGGCTGGCTGGAGTCAGGAGTGGGGGCCCATCCTCCTCTCCCCCCATAAACATCCCCCCACCTGAATGTGGCTTATGT
Downstream sequence
AACATGACTCTGGTGCAGTCCTTCTCTGAGGGAAAGGAGCCTACGGCCTCCAATTAACCCAATTAGAAGTCATTACAGGCAATCCTGGCCTCCCCCTAAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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