Basic Information
VIS ID
TVIS44012978
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
106165037/105622415 (Hg38)
End
106165037/105622415 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/5341107; hsa-mir-11399/Downstream/2274808;
Nearest TSS
ENST00000473358/Upstream/3457; ENST00000635102/Downstream/330479;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2096124, chr1-CpG: 37/Downstream/458356
Nearby gene
LINC01676(-3480) ;
Upstream sequence
ttctgattcttggtgatcattgtagacttgcattagtgtccgtacatttgaaggagcaaataattttatcattgtttacagactgattctggcagatata
Downstream sequence
gaccttcttctgctggatacccagactggtgggactaactctgtgactgtaggtgagcaggaatagagttgggttgtggggtaacttttgggtctacagt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate