Basic Information
VIS ID
TVIS44012995
Fusion event
HTLV-1-LOC101928841 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114070846/113416531 (Hg38)
End
114070846/113416531 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928841
Nearest miRNA
hsa-mir-1267/Upstream/153532; hsa-mir-4502/Downstream/827974;
Nearest TSS
ENST00000623511/Upstream/52383; ENST00000414992/Downstream/32611;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2750, chr13-CpG: 20/Downstream/14577
Nearby gene
LOC101928841(No orient, 2138)
Upstream sequence
CACTGTCCATCCCAGGCTGACTGAGGCCATAAGCGCTGGATGCTCTCCCAGGCCTGAGACATGAGTAAGTCAGCAGAGGGTTCCAGGGATGCTTGCCTGC
Downstream sequence
CGCCTAATTACAGCAACTGCCTAGGGTCCCTCAGTACCTGTGGGACATACAGGGTATCGGGTTAGTGAGCTTCTGTCACCAATTTGTGCTACAAACATAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate