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VISDB
Viral Integration Site DataBase
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TVIS44013025
Basic Information
VIS ID
TVIS44013025
Fusion event
HTLV-1-LOC105377110 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
59245224/59259498 (Hg38)
End
59245224/59259498 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3B
Target gene
LOC105377110
Nearest miRNA
hsa-let-7g/Upstream/3406904; hsa-mir-12124/Downstream/1358307;
Nearest TSS
ENST00000440867/Upstream/194348;
ENST00000475527/Downstream/129206;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/209280
,
chr3-CpG: 48/Downstream/1991434
Nearby gene
C3orf67
(No orient, 209509)
Upstream sequence
ATGTTACTCAGGGCCTGCTCCTTTTCTCACACACAATCTATTTAGTAAATACTGGGGAGATGAATAGGAGCTCCTTGGTTTTTGCGGTGTATCTAGGTGA
Downstream sequence
GCAGTTTCTATTAATAAAGTGTTTTCCATTACTTGAGACCCAGACAGCAGCGGTGGGTCTTTTGTCATGTGCAGTTGTTGGGTGTCCAGTGGTGTCAGAg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL130
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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