Basic Information
VIS ID
TVIS44013026
Fusion event
HTLV-1-PDZRN3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
73555016/73505865 (Hg38)
End
73555016/73505865 (Hg38)
Orient
+
Location type
Intronic
Target gene
PDZRN3
miRNAs that regulate target gene
hsa-mir-197-3p
Nearest miRNA
hsa-let-7g/Upstream/1963776; hsa-mir-12124/Downstream/1708611;
Nearest TSS
ENST00000440867/Upstream/31233; ENST00000608743/Downstream/51073;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/120943, chr3-CpG: 151/Downstream/118214
Upstream sequence
TTTTTTAAAAAAAAACAGCACATAAAGTCAGTGTGAGGAAAAATAAGCTCTATTTAAAAATTTGAGGCAAAAAATAAAATTGCGCTGGATTAGAGACCCC
Downstream sequence
CAACCGACTTTCCAACCAATCCCTCTGTAATAAGCACAGAGGAGGCACTCAACCATCTTTTGGATGGTCAAGTGAACTCATTTAAATATGACAAGTATCC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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