Basic Information
VIS ID
TVIS44013051
Fusion event
HTLV-1-DYNC1I1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
95449516/95820204 (Hg38)
End
95449516/95820204 (Hg38)
Orient
-
Location type
Intronic
Target gene
DYNC1I1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/2103199; hsa-mir-10399/Downstream/399458;
Nearest TSS
ENST00000635602/Upstream/15920; ENST00000519371/Downstream/17414;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/47084, chr7-CpG: 75/Downstream/501263
Upstream sequence
TAGCCAACAGATGGAAAATTCTCCCACCATAAATTAAGAAAAATGCTTTTTAAAAAGAGCCTGATATAAGTATGTATTTCACTGTTCCACATTTATTTCT
Downstream sequence
GACATCAGAAAATCTTTATCATCATTGCCAGTCCTAAGTAAGGAAAAAATTGAGGCCAGGAAATAAAACATTAACTCATTATTTGAATACCATCCTTTCT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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