VISDB Viral Integration Site DataBase

VIS ID

TVIS44013063

Fusion event

HTLV-1-MAFK integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

p22.3

Reference genome

Start

End

1577769/1538133 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-92b-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-203a-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-548e-5p ; hsa-mir-3613-3p ; hsa-mir-4694-3p ; hsa-mir-5692a ; hsa-mir-6838-5p ; hsa-mir-6124 ; hsa-mir-671-5p ; hsa-mir-4761-5p ; hsa-mir-6814-5p ; hsa-mir-6880-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4480 ; hsa-mir-1909-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-665 ; hsa-mir-4763-5p ; hsa-mir-4707-3p ; hsa-mir-4632-3p ; hsa-mir-4485-5p ; hsa-mir-4258 ; hsa-mir-6083 ; hsa-mir-433-3p ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-3074-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-1306-5p ; hsa-mir-4716-5p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-6829-3p ; hsa-mir-1260a ; hsa-mir-6791-3p ; hsa-mir-532-3p ; hsa-mir-1281 ; hsa-mir-7108-3p ; hsa-mir-1224-3p ; hsa-mir-1207-5p ; hsa-mir-1268a ; hsa-mir-1268b ; hsa-mir-1285-3p ; hsa-mir-1293 ; hsa-mir-1301-3p ; hsa-mir-1343-5p ; hsa-mir-134-3p ; hsa-mir-1539 ; hsa-mir-1908-5p ; hsa-mir-1909-3p ; hsa-mir-3138 ; hsa-mir-3187-5p ; hsa-mir-3193 ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-363-5p ; hsa-mir-3659 ; hsa-mir-3665 ; hsa-mir-378g ; hsa-mir-3944-5p ; hsa-mir-4483 ; hsa-mir-4486 ; hsa-mir-4658 ; hsa-mir-4660 ; hsa-mir-4688 ; hsa-mir-4706 ; hsa-mir-4711-3p ; hsa-mir-4734 ; hsa-mir-4749-5p ; hsa-mir-4763-3p ; hsa-mir-4767 ; hsa-mir-4793-5p ; hsa-mir-4800-5p ; hsa-mir-486-3p ; hsa-mir-5047 ; hsa-mir-505-5p ; hsa-mir-5189-5p ; hsa-mir-541-3p ; hsa-mir-574-5p ; hsa-mir-6081 ; hsa-mir-612 ; hsa-mir-654-5p ; hsa-mir-663a ; hsa-mir-6721-5p ; hsa-mir-6722-3p ; hsa-mir-6743-5p ; hsa-mir-6745 ; hsa-mir-6756-5p ; hsa-mir-6759-5p ; hsa-mir-6766-5p ; hsa-mir-6770-5p ; hsa-mir-6776-5p ; hsa-mir-6777-5p ; hsa-mir-6787-5p ; hsa-mir-6790-5p ; hsa-mir-6815-5p ; hsa-mir-6860 ; hsa-mir-6865-5p ; hsa-mir-6889-5p ; hsa-mir-7114-5p ; hsa-mir-744-5p ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-339/Upstream/515107; hsa-mir-10399/Downstream/306047;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/1776, chr7-CpG: 82/Downstream/1677

Upstream sequence

GTGCAAATGGGTTTGTTGACTGCCTGCCGGCCTCGTGATGTCTGTGCAACCTGACCTGAAGTCAGGATCGCGTTTGGGCTTCTCGGTTTCCATGACAACC

Downstream sequence

GTGGGGGCTGGCTCGGTCCCAAGGTCGCCATGGCAACTATCGGAGGGCTCATGCCGGGGATGCTTTGGCTGGGTTTTTCATGAATGATTAGAATGTGTGA