Basic Information
VIS ID
TVIS44013083
Fusion event
HTLV-1-SUCLG2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
67747675/67697251 (Hg38)
End
67747675/67697251 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
SUCLG2-AS1
Nearest miRNA
hsa-let-7g/Upstream/471724; hsa-mir-12124/Downstream/1351707;
Nearest TSS
ENST00000440867/Upstream/29004; ENST00000491017/Downstream/306965;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/42669, chr3-CpG: 21/Downstream/310505
Upstream sequence
CTTCTGCACTCTCTTGCTTAGAACATAGGATCCTAAGCCTGCCACCCAGGGCCTTCCAGGGCTGGCTCTCTTTACTGCTTTTAAATGGCTCATTTCCCCT
Downstream sequence
GTATTGAGTATCTGCTCTGGGTGGCAAATCATTTTGTGTGAAATATATTCATTCACCTGTAGACACCTTACCATATCTCCAAGTGACTCTTTGAAATCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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