Basic Information
VIS ID
TVIS44013095
Fusion event
HTLV-1-LOC105377762 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
178963872/179536871 (Hg38)
End
178963872/179536871 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC105377762
Nearest miRNA
hsa-mir-10397/Upstream/2907371; hsa-mir-1229/Downstream/261407;
Nearest TSS
ENST00000502646/Upstream/21292; ENST00000507569/Downstream/13687;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/5972, chr5-CpG: 100/Downstream/13426
Nearby gene
RUFY1(+13690) ;
Upstream sequence
GCTGATCTTTTGAAATTTGAAAAACGTCTTTAGATGACCGAGCAAAAAGATTTTTAAAAATGGTAATGAAAATGGAATGCAGCTACTGCAGCTCATAAAA
Downstream sequence
ATTTTAGATAGCAATTCCTACAACCGTATGCTTTTATAGCTAGACAGGAGAATTACGATAGCATGAGTTGATTCATTTTATTACTTTTCTTCCCTTTCTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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