Basic Information
VIS ID
TVIS44013110
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
129481183/128996638 (Hg38)
End
129481183/128996638 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/702460; hsa-mir-6763/Downstream/3585359;
Nearest TSS
ENST00000382841/Upstream/132502; ENST00000537367/Downstream/89362;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/51340, chr12-CpG: 26/Downstream/306552
Nearby gene
GLT1D1(+11674) ;
Upstream sequence
GAGTGCCTGAGGAGGCTTTTGAATGTTATGAGAGAGGAAACAATAGTCTTGAGAAACAAAGCTATTGAATGGCAAAGCAGGGTTTttttgagagagaatg
Downstream sequence
attttaatgttcaaaatgcaaggtctagatgggtattggactcaaaatcctgaaggactcaggcttaacgtctgtgccttaattaccagattggaaagaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate