Basic Information
VIS ID
TVIS44013118
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
97793813/97141559 (Hg38)
End
97793813/97141559 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13D
Nearest miRNA
hsa-mir-1297/Upstream/714267; hsa-mir-1267/Downstream/1066965;
Nearest TSS
ENST00000623511/Upstream/146829; ENST00000449284/Downstream/38063;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/147076, chr13-CpG: 34/Downstream/205149
Nearby gene
LINC00456(No orient, 30823)
Upstream sequence
TACATGTTTGAATTTTTCCAATTGTTCTTTATGCTGAATATTCTTCATTTAAAAGTAGCTCACATATTTTTTCTGCAGTCTTTAATTGCAGATGAGTTAG
Downstream sequence
GTCTACAACTTCTTTGGTGCCTCTGTGCACACTACAGTTTGCACACACACACCCTGTCACTACTCTCTTTTATTCTATAGGATCGTTTTATGGAGTTCAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate