Basic Information
VIS ID
TVIS44013132
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
75660763/77664681 (Hg38)
End
75660763/77664681 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/267627; hsa-mir-1250/Downstream/2042495;
Nearest TSS
ENST00000595228/Upstream/95986; ENST00000588549/Downstream/63878;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/135611, chr17-CpG: 21/Downstream/128563
Nearby gene
LINC01987(-58191) ;
Upstream sequence
gagtaacacatggtgaaacgtatggctaagtttaaaaggcctcttttaataactggaaaatgacatgataactaagaagaaagcatggtgtcatatgtca
Downstream sequence
atcggcagcattttctctttcttaatggcagagacatataggtgcattttataattgatggtgtcttagattccatgatacacagTATTTAATGtttatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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