Basic Information
VIS ID
TVIS44013205
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36437227/35946325 (Hg38)
End
36437227/35946325 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/600698; hsa-let-7e/Downstream/3463298;
Nearest TSS
ENST00000633603/Upstream/9205; ENST00000592518/Downstream/790;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1323, chr19-CpG: 123/Downstream/12644
Nearby gene
LRFN3(+1130) ;
Upstream sequence
CTGGAAATAGAAATGAGGGCTTTGTCAGCAGAGATGGGAACTGACGCTGCTGGGGTTAAGACGGCTTCTTGTGGGGGATGATTCCAAGTCCCCACTATGG
Downstream sequence
GACATTTTTTCTTTtttcttttttttttttacagatggggtctcactatattgcccaggctgatcccaaactggcctcaagtgatcctcccgtctcagcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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