VISDB Viral Integration Site DataBase

VIS ID

TVIS44013221

Fusion event

HTLV-1-DSTYK integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

205157143/205188015 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-192-5p ; hsa-mir-93-5p ; hsa-mir-15a-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-6504-3p ; hsa-mir-8080 ; hsa-mir-627-3p ; hsa-mir-877-3p ; hsa-mir-544a ; hsa-mir-6878-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-6872-3p ; hsa-mir-4438 ; hsa-mir-6505-5p ; hsa-mir-5192 ; hsa-mir-4261 ; hsa-mir-875-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6882-5p ; hsa-mir-922 ; hsa-mir-3678-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-2467-3p ; hsa-mir-4645-3p ; hsa-mir-3919 ; hsa-mir-3123 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-3127-5p ; hsa-mir-3918 ; hsa-mir-619-5p ; hsa-mir-5004-3p ; hsa-mir-1200 ; hsa-mir-496 ; hsa-mir-432-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5089-5p ; hsa-mir-4279 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-548q ; hsa-mir-6506-5p ; hsa-mir-1976 ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-562 ; hsa-mir-4326 ; hsa-mir-498 ; hsa-mir-6888-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-3120-5p ; hsa-mir-3653-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-5571-5p ; hsa-mir-6885-3p ; hsa-mir-29b-2-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-106a-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1304-3p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3622b-5p ; hsa-mir-3664-5p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4639-3p ; hsa-mir-4663 ; hsa-mir-5186 ; hsa-mir-5197-5p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-6794-3p ; hsa-mir-7160-5p ; hsa-mir-8077

Nearest miRNA

hsa-mir-101-1/Upstream/3184779; hsa-mir-1182/Downstream/260287;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/117990, chr1-CpG: 95/Downstream/22820

Upstream sequence

AGAGGAGAAATTTCTAGGAACCTTGGTTGAAGGACATATCAGGGAAAAAACCCCAGTGAGAAAAAGCTCTTCACATATCAAACAGAATTCCTTTCCCTAG

Downstream sequence

CTCACCCCCTAGGAACAAACTGTTATTTCTACCCAGAAATGTGGGAGTGACCTGATCTTCCCGCCCCGCTCCTTTTTCATTCAGTGGAGGGACAGCCTAA