VISDB Viral Integration Site DataBase

VIS ID

TVIS44013247

Fusion event

HTLV-1-ZNF620 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p22.1

Reference genome

Start

End

40547710/40506219 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-510-3p ; hsa-mir-580-3p ; hsa-mir-1304-5p ; hsa-mir-1251-3p ; hsa-mir-494-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-370-5p ; hsa-mir-3912-5p ; hsa-mir-2054 ; hsa-mir-4662a-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4733-5p ; hsa-mir-4671-3p ; hsa-mir-143-5p ; hsa-mir-6080 ; hsa-mir-4328 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4496 ; hsa-mir-5683 ; hsa-mir-7844-5p ; hsa-mir-4289 ; hsa-mir-548an

Nearest miRNA

hsa-mir-12127/Upstream/1367953; hsa-let-7g/Downstream/3607993;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/82, chr3-CpG: 54/Downstream/18419

Upstream sequence

GAAGAGGTTCGCGGTCCGGGTAACTGATTGGTTTTCCTGGGGCTTGTTCTGCCTGGTTTTGCAACCCCTTTGCTTTTTGGGGTGAGGAGTTGGCGGAAAG

Downstream sequence

GAGAGGGGCCCAAGTAGCACAGAGGGCATTTGCGGGGTGCGAGGCAGCATCAATCTCACCGGTGCTTCTTTATTTTCTCTTCAGTTTCACTTCTCCGAAC