Basic Information
VIS ID
TVIS44013258
Fusion event
HTLV-1-LOC107986279 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
53204143/52337977 (Hg38)
End
53204143/52337977 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986279
Nearest miRNA
hsa-mir-12113/Upstream/4685234; hsa-mir-1243/Downstream/374705;
Nearest TSS
ENST00000502981/Upstream/259633; ENST00000503051/Downstream/290389;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/260895, chr4-CpG: 141/Downstream/320820
Nearby gene
SPATA18(+240672) ;
Upstream sequence
gactttgggaggtgcaatggtttgaatgtgtcccctccaaaatttaggtagtgccaatgtggcagtattaagtgaaaagtcattaggccatgagggtttc
Downstream sequence
tcccttgtgagtgggattaggttcccttacaaaggagcttgacggagggagttggccctctcttgctctttagtcagcggccatgtgaagatgttggcat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate