Basic Information
VIS ID
TVIS44013277
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
123719279/124079225 (Hg38)
End
123719279/124079225 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/7058906; hsa-mir-10399/Downstream/2978863;
Nearest TSS
ENST00000635602/Upstream/46202; ENST00000497598/Downstream/208319;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/45588, chr7-CpG: 19/Downstream/684895
Nearby gene
TMEM229A(-45756) ;
Upstream sequence
tatatgtatgtatatatatgtatatatCACAAATCACACAGGAAAATCACAAACACAcacatatcacaaactcacatgtgaaaatcaattactaaagata
Downstream sequence
aagaacacaggggtacctttgtcatttggaagccagtactccatgctggcacagcaagaccctgaactctgaacatccactcttgtggctaacatgattc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate