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TVIS44013339
Basic Information
VIS ID
TVIS44013339
Fusion event
HTLV-1-FOXN3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
89837071/89370727 (Hg38)
End
89837071/89370727 (Hg38)
Orient
-
Location type
Intronic
Target gene
FOXN3
miRNAs that regulate target gene
hsa-mir-574-5p
;
hsa-mir-21-5p
;
hsa-mir-92b-3p
;
hsa-mir-210-3p
;
hsa-mir-4777-3p
;
hsa-mir-5096
;
hsa-mir-6790-5p
;
hsa-mir-4658
;
hsa-mir-197-3p
;
hsa-mir-4477a
;
hsa-mir-921
;
hsa-mir-1257
;
hsa-mir-6073
;
hsa-mir-548au-3p
;
hsa-mir-449b-5p
;
hsa-mir-449a
;
hsa-mir-34c-5p
;
hsa-mir-34a-5p
;
hsa-mir-3659
;
hsa-mir-642b-3p
;
hsa-mir-642a-3p
;
hsa-mir-16-1-3p
;
hsa-mir-425-5p
;
hsa-mir-3174
;
hsa-mir-7153-3p
;
hsa-mir-562
;
hsa-mir-6878-3p
;
hsa-mir-4666b
;
hsa-mir-5011-3p
;
hsa-mir-4684-3p
;
hsa-mir-203a-3p
;
hsa-mir-1245b-3p
;
hsa-mir-888-5p
;
hsa-mir-409-3p
;
hsa-mir-335-3p
;
hsa-mir-6500-3p
;
hsa-mir-3614-5p
;
hsa-mir-890
;
hsa-mir-4652-3p
;
hsa-mir-4743-3p
;
hsa-mir-374a-3p
;
hsa-mir-3686
;
hsa-mir-3607-3p
;
hsa-mir-34c-3p
;
hsa-mir-4762-3p
;
hsa-mir-3192-3p
;
hsa-mir-29a-5p
;
hsa-mir-3920
;
hsa-mir-6509-5p
;
hsa-mir-8067
;
hsa-mir-6508-5p
;
hsa-mir-370-5p
;
hsa-mir-6867-5p
Nearest miRNA
hsa-mir-1260a/Upstream/12104437; hsa-mir-1185-1/Downstream/4577499;
Nearest TSS
ENST00000550708/Upstream/15667;
ENST00000556383/Downstream/29268;
Nearest CpG islands
None/Target,
chr14-CpG: 35/Upstream/207872
,
chr14-CpG: 200/Downstream/45468
Upstream sequence
GTTTAAAGGGAATAAGCAGAGAAAGAACTTTGGTTTGATGCGCATGTTCCAAAATGAATGAGAGAAAGCTAGAGCCCAGTGTCATTCTTCTGGAATTATC
Downstream sequence
TACACTGGATTTGTTTGGCAAAACACACAGAGCCGTAAATTACACTCAACTCCGGATAGGGTCTGCATGGCCCGTAGGGTCCATCTACCCCAGTGAGGAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL228
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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