VISDB Viral Integration Site DataBase

VIS ID

TVIS44013425

Fusion event

HTLV-1-UBN2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q34

Reference genome

Start

End

138995381/139310635 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-10a-5p ; hsa-mir-100-5p ; hsa-let-7e-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-101-3p ; hsa-mir-130a-3p ; hsa-mir-144-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-937-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aw ; hsa-mir-7856-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-545-3p ; hsa-mir-4517 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-150-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-590-3p ; hsa-mir-603 ; hsa-mir-4775 ; hsa-mir-8485 ; hsa-mir-186-3p ; hsa-mir-653-3p ; hsa-mir-3168 ; hsa-mir-4263 ; hsa-mir-495-5p ; hsa-mir-513b-5p ; hsa-mir-194-3p ; hsa-mir-1303 ; hsa-mir-133a-5p ; hsa-mir-889-5p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4505 ; hsa-mir-5787 ; hsa-mir-6842-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-765 ; hsa-mir-1290 ; hsa-mir-1297 ; hsa-mir-3150b-3p ; hsa-mir-4465 ; hsa-mir-4784 ; hsa-mir-6757-3p ; hsa-mir-6834-5p ; hsa-mir-6888-5p ; hsa-mir-8068 ; hsa-mir-9500 ; hsa-mir-187-5p ; hsa-mir-4635 ; hsa-mir-378a-5p ; hsa-mir-605-3p ; hsa-mir-6126 ; hsa-mir-218-5p ; hsa-mir-3942-3p ; hsa-mir-431-5p ; hsa-mir-17-3p ; hsa-mir-4276 ; hsa-mir-4493 ; hsa-mir-5190 ; hsa-mir-5094 ; hsa-mir-3074-3p ; hsa-mir-3163 ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-5089-3p ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6509-3p ; hsa-mir-4540 ; hsa-mir-6723-5p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-646 ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-503-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-5702 ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-3927-5p ; hsa-mir-454-5p ; hsa-mir-382-3p ; hsa-mir-4653-3p ; hsa-mir-6867-5p ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-4803 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-3658 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-499a-5p ; hsa-mir-4535 ; hsa-mir-4800-5p ; hsa-mir-659-5p ; hsa-mir-492 ; hsa-mir-6861-3p ; hsa-mir-600 ; hsa-mir-5693 ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-5701 ; hsa-mir-197-3p ; hsa-mir-4717-3p ; hsa-mir-4640-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-1193 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-2392 ; hsa-mir-4662a-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6778-3p ; hsa-mir-6715b-3p ; hsa-mir-16-1-3p ; hsa-mir-6715a-3p ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-10399/Upstream/266478; hsa-mir-11400/Downstream/3163892;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/78425, chr7-CpG: 108/Downstream/29549

Nearby gene

UBN2(+2399) ;

Upstream sequence

caagggaggcggatcacttgaggtcaggagttagaaactaacctggccaacatggtgaaaccccgtctctaccaaaaatacaaaaaaatcagctgggcat

Downstream sequence

ggtgactcatgtctgtaatcccagctactcaggaggctaaggcaggagaatcgcttgcacctaggaggcagaggttgcagtgagccgagatcgtgctact