Basic Information
VIS ID
TVIS44013497
Fusion event
HTLV-1-ANKFN1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
54247565/56170204 (Hg38)
End
54247565/56170204 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKFN1
Nearest miRNA
hsa-mir-10226/Upstream/5401474; hsa-mir-1250/Downstream/721066;
Nearest TSS
ENST00000595228/Upstream/16694; ENST00000573365/Downstream/3971;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/324426, chr17-CpG: 40/Downstream/340389
Upstream sequence
TTCTTTGCTCCATCTTGAAAAACAAATATGGAAGAATATTCAAAAAATGACCTTGGCGTCAAAGAAAATGATTAGTGAAGGCACCCattcactcagtaag
Downstream sequence
tcaacatttattgagctcctactgtattcctcctccaggaggaagaaggaaggctccctgccccttcagggatacctgcccagagagtaagatagacacc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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