Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene10477009104163151041671610393834103942081038373310384057104298661043012910402047104021961040318710403336103853861038552710398033103981501039128710391396104221291042214310430371
Basic Information
VIS ID
TVIS44013536
Fusion event
HTLV-1-BAGE integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
End
11082084/10430371 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10396a/Upstream/1442706; hsa-let-7c/Downstream/2976013;
Upstream sequence
AAGTTTTGTTCTGTTTTTAATTCACAATGAAAATCTGACTactcatttattcaacaaatatttgagtaccagctatgtgctaggcactgttctaaacacA
Downstream sequence
CCAATAACATTTATTTAGTGGTACTGATTCTGTACTCTAGAAcaatggctcttaactggggagagggagcaatttttgctgcccaagggacatctggcaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate