Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44013536
Proximate region of VIS (GRCh38)
VIS
Enhancer
Enhancer/Promoter
Promoter
Gene
10477009
10416315
10416716
10393834
10394208
10383733
10384057
10429866
10430129
10402047
10402196
10403187
10403336
10385386
10385527
10398033
10398150
10391287
10391396
10422129
10422143
10430371
Basic Information
VIS ID
TVIS44013536
Fusion event
HTLV-1-BAGE integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
11082084/10430371 (Hg38)
End
11082084/10430371 (Hg38)
Orient
+
Location type
Intronic
Target gene
BAGE
Nearest miRNA
hsa-mir-10396a/Upstream/1442706; hsa-let-7c/Downstream/2976013;
Nearest TSS
ENST00000624081/Upstream/87634;
ENST00000612957/Downstream/91182;
Nearest CpG islands
None/Target,
chr21-CpG: 261/Upstream/24633
,
chr21-CpG: 159/Downstream/90672
Upstream sequence
AAGTTTTGTTCTGTTTTTAATTCACAATGAAAATCTGACTactcatttattcaacaaatatttgagtaccagctatgtgctaggcactgttctaaacacA
Downstream sequence
CCAATAACATTTATTTAGTGGTACTGATTCTGTACTCTAGAAcaatggctcttaactggggagagggagcaatttttgctgcccaagggacatctggcaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL3
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate