Basic Information
VIS ID
TVIS44013547
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
149460216/149139080 (Hg38)
End
149460216/149139080 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/8455197; hsa-mir-1202/Downstream/1963595;
Nearest TSS
ENST00000381078/Upstream/72904; ENST00000451095/Downstream/78846;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/260368, chr6-CpG: 113/Downstream/177802
Nearby gene
UST(+62090) ;
Upstream sequence
TCAGCGCATCTGGCCAGAGAGTTATTATATTACAGCagagcatcacgagagtcagcagcgctataggtccggcgtcatgagctgtgtgactgggggaagt
Downstream sequence
cacttaacctctctgtgcccaggcttcttcacatacgaaatggaaataatgacagtacatattcatagggctttcatgaggatcaaataaattactatat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate