Basic Information
VIS ID
TVIS44013657
Fusion event
HTLV-1-MMP24 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
33827757/35239954 (Hg38)
End
33827757/35239954 (Hg38)
Orient
+
Location type
Intronic
Target gene
MMP24
miRNAs that regulate target gene
hsa-mir-29b-3p ; hsa-mir-29c-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/249457; hsa-mir-1-1/Downstream/214000;
Nearest TSS
ENST00000382410/Upstream/13300; ENST00000429167/Downstream/32102;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/12626, chr20-CpG: 72/Downstream/37576
Upstream sequence
aaggagagggaagagtcacaggtcatatgaggctgctggtttggacaactgggtagctgatggtgccataccctgacatagCACAGGCATATTGAGCTCA
Downstream sequence
CTATTGTCTGAGATAAGGCATTGCACTCCAGGAGTGTGAGGTATAGGAAGTCCTGGGAGGGGGAAGGGCTGCCTGTCCAACACTCTGACCGTACGGAATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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