Basic Information
VIS ID
TVIS44013659
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
59618570/61043514 (Hg38)
End
59618570/61043514 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/478889; hsa-mir-1-1/Downstream/910032;
Nearest TSS
ENST00000382410/Upstream/229303; ENST00000441660/Downstream/34302;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/19265, chr20-CpG: 261/Downstream/208407
Nearby gene
LINC01718(+35550) ;
Upstream sequence
GGAGCCGCCTGCATTGCTGGGATCAAAAACACCTGCAGGAGACCCTGCCATACCCCCTGAGACTGGAGACACGGAGAGCAGGGGACTGTGAAGGGTCTTG
Downstream sequence
AACTGGATTGTGAAGCCGTGCGAGAGGCTGGATAACAGAGCCGCACATGGGAATTTTTGCTCCGCAAGTCAACCTCAACCCTAAAACAAAAATTACATTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate