Basic Information
VIS ID
TVIS44013665
Fusion event
HTLV-1-PROS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
93691991/93973147 (Hg38)
End
93691991/93973147 (Hg38)
Orient
-
Location type
Intronic
Target gene
PROS1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-let-7g/Upstream/6746870; hsa-mir-12124/Downstream/2386817;
Nearest TSS
ENST00000440867/Upstream/14393; ENST00000478400/Downstream/492;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/4858190, chr3-CpG: 39/Downstream/563
Upstream sequence
CTCAGATCAGTGGCATGCAGTGTTAAAAAATCCTCAGTACAAACGATCTGAGAAATAGAATACAGTATTTAACAGTCCTTTTGATTTCAGGGTTAGAAAG
Downstream sequence
TGACATATATCTACTGCTATACAAACCCTCAGTCATCCTAAAACATTTCGTTAATGTGAGACAAGCAAACCAAGCTCAAAGTCCAGAAATTGCAAAAGGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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