Basic Information
VIS ID
TVIS44013680
Fusion event
HTLV-1-LOC100128885 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
64050017/64589639 (Hg38)
End
64050017/64589639 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
LOC100128885
Nearest miRNA
hsa-mir-1183/Upstream/968470; hsa-mir-10399/Downstream/89425;
Nearest TSS
ENST00000635602/Upstream/26533; ENST00000360117/Downstream/76444;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/19189, chr7-CpG: 23/Downstream/76698
Upstream sequence
tcccgggaggctgaggttgcagtgagccaagatcaggccactgcactcctttctgggctacagagcaagactatgtcacaaaaaaaaagaaatgagtctt
Downstream sequence
tattctcctttgttaaaaataagagaggatattttgccaatctctcttttcttaaagcattcagattatatgtagattttttctttgttttgaaagatat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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