Basic Information
VIS ID
TVIS44013683
Fusion event
HTLV-1-TCONS_00068220 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
48906322/47993762 (Hg38)
End
48906322/47993762 (Hg38)
Orient
-
Location type
Intronic
Target gene
TCONS_00068220
Nearest miRNA
hsa-mir-124-1/Upstream/5097487; hsa-mir-10400/Downstream/13721026;
Nearest TSS
ENST00000518652/Upstream/18464; ENST00000518360/Downstream/14638;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/32415, chr8-CpG: 84/Downstream/14515
Nearby gene
UBE2V2(+14673) ;
Upstream sequence
cagcaagtttttattagggattttaaaaggggaaggggtgtatgaacagggagtaagtcacaaagatcacgtgcttcagagggcaataaaggtcacaagg
Downstream sequence
caaggcaaaattagaattactgatgagggcctatgtcccgctgttcatacattgtcttgataaacatcttaacaggaaacagggttcgagagcagacaac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate