Basic Information
VIS ID
TVIS44013692
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
188459465/188490334 (Hg38)
End
188459465/188490334 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/8051944; hsa-mir-1182/Downstream/4225994;
Nearest TSS
ENST00000473358/Upstream/271934; ENST00000426262/Downstream/18204;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1809385, chr1-CpG: 56/Downstream/4318168
Nearby gene
LINC01037(No orient, 1013111)
Upstream sequence
ATAACCTGTTCACAGAGGTGTTTTACCCTTATTTATTTGAAGCTGCACTTGAGTGAAACACAgatgtgacactgattcactcaggtgttgtcatctgtag
Downstream sequence
ctcatctccccttggtgaagatttttgagacctgaaaccttgaaatactgtacatcctaaaaaattatattaattattcagctgtttaatcttgattcct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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