Basic Information
VIS ID
TVIS44013747
Fusion event
HTLV-1-POMK integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
42977366/43122223 (Hg38)
End
42977366/43122223 (Hg38)
Orient
+
Location type
Exonic
Target gene
POMK
miRNAs that regulate target gene
hsa-mir-615-3p
Nearest miRNA
hsa-mir-124-1/Upstream/225948; hsa-mir-10400/Downstream/18592565;
Nearest TSS
ENST00000518652/Upstream/28705; ENST00000517319/Downstream/18232;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/28438, chr8-CpG: 165/Downstream/17882
Upstream sequence
GAAGGAGCACAAAGTTGCACTCTCACAGCTCACCAGCCTGGAGATGAAAGATGATTTCCTCCATGGACTGCAGATGCTGAAATCTCTCCAAGGCACACAT
Downstream sequence
GTTGTCACGCTGCTTGGCTATTGTGAGGATGACAACACTATGCTTACTGAATATCACCCTCTAGGTTCCTTGAGTAACCTGGAAGAAACACTAAACCTTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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