Basic Information
VIS ID
TVIS44013766
Fusion event
HTLV-1-LOC100288798 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
46844319/46450536 (Hg38)
End
46844319/46450536 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA12A
Target gene
LOC100288798
Nearest miRNA
hsa-mir-1244-3/Upstream/4126677; hsa-let-7i/Downstream/737276;
Nearest TSS
ENST00000382841/Upstream/61680; ENST00000607353/Downstream/86966;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/66463, chr12-CpG: 64/Downstream/380593
Upstream sequence
GACATGCTAACCAGTCCAGAAATAACAATGTCAGTGCAACTGGCCTTTCCCCACTGCTTCTGTAGAGGCTGATGTTGTTCCTGTGGCCCAGCCAGGGCAC
Downstream sequence
CATCCTAAAGAACACGGAGCCAGTGTGCTGTGGGAGTTGAGGCTGCTGTCAAAGTTGGCCAGTTCCTTTCCAGACACAGTCACTTCCCACTGGAAGTGAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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