VISDB Viral Integration Site DataBase

VIS ID

TVIS44013796

Fusion event

HTLV-1-PEX26 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr22

Cytoband

q11.21

Reference genome

Start

End

18562642/18079876 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-23a-3p ; hsa-mir-545-3p ; hsa-mir-567 ; hsa-mir-219a-2-3p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-891a-3p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-4302 ; hsa-mir-4501 ; hsa-mir-4280 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-6872-3p ; hsa-mir-4307 ; hsa-mir-6079 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-7160-5p ; hsa-mir-4478 ; hsa-mir-4733-5p ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-2052 ; hsa-mir-4736 ; hsa-mir-4755-3p ; hsa-mir-657 ; hsa-mir-4680-5p ; hsa-mir-4716-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4781-3p ; hsa-mir-329-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4684-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-433-5p ; hsa-mir-548c-3p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-185-3p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-4656 ; hsa-mir-7974 ; hsa-mir-4743-5p ; hsa-mir-4487 ; hsa-mir-4663 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-134-3p ; hsa-mir-6871-5p ; hsa-mir-4508 ; hsa-mir-483-5p ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5193 ; hsa-mir-4756-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-3140-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-660-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-143-5p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6075 ; hsa-mir-5693 ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-6778-3p ; hsa-mir-891b ; hsa-mir-149-5p ; hsa-mir-4772-3p ; hsa-mir-7113-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-5089-5p ; hsa-mir-496 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-1976 ; hsa-mir-1249-5p ; hsa-mir-149-3p ; hsa-mir-1908-5p ; hsa-mir-194-5p ; hsa-mir-2467-3p ; hsa-mir-3141 ; hsa-mir-3153 ; hsa-mir-4446-3p ; hsa-mir-4481 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-451b ; hsa-mir-4696 ; hsa-mir-4706 ; hsa-mir-4728-5p ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4749-5p ; hsa-mir-5001-5p ; hsa-mir-5196-5p ; hsa-mir-6132 ; hsa-mir-6501-3p ; hsa-mir-663a ; hsa-mir-6721-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6785-5p ; hsa-mir-6787-5p ; hsa-mir-6797-5p ; hsa-mir-6836-5p ; hsa-mir-6883-5p ; hsa-mir-762 ; hsa-mir-8087 ; hsa-mir-9500 ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-4314 ; hsa-mir-498 ; hsa-mir-5571-5p

Nearest miRNA

hsa-mir-3198-1/Upstream/98915; hsa-let-7a-3/Downstream/1883877;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/1232, chr22-CpG: 100/Downstream/30471

Upstream sequence

CTGAGTTGGGAGCTGGAGAGGAACAGTCCCAAGGTGGAGGTGGGAATGGAAATGGAGGGGAACCACTTCTAACTGAAATTGGTTTTTCTGCTGACAGCTC

Downstream sequence

ATTGGAGGTGAAGTGCTCCCTGTGTGTTGTGGGGATCCAGGCCCTGGCAGAAATGGATCGGTGGCAAGAAGTCCTCTCCTGGGTCCTTCAGTATTACCAG