Basic Information
VIS ID
TVIS44013844
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
85856097/85462319 (Hg38)
End
85856097/85462319 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369876 ; LOC107984537
Nearest miRNA
hsa-let-7i/Upstream/4303858; hsa-mir-1178/Downstream/1282749;
Nearest TSS
ENST00000382841/Upstream/144259; ENST00000551529/Downstream/374251;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/181397, chr12-CpG: 52/Downstream/2573009
Nearby gene
ALX1(+160536) ;
Upstream sequence
ataaaataacaccacacttgtaggatttttagaatggttaaTTAACGTTTATTAAAAATATGTTTAATGTCTGTTAAATACATAATCAAAATAATGATAT
Downstream sequence
CTATTACCCCCAAAACTTTTCTCATATATCAATATAttgactgtggtgatggtttcatgggtttacacgtctcaaatttaccacattgtacattttaaat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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